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Find the optimal number of cell clusters for Seurat object

Source: R/cluster.R
OptimalNumClusters.Rd

Find the optimal number of cell clusters using fpc::prediction.strenth

Usage

OptimalNumClusters(seu, reduction = c("pca", "umap"))

Arguments

seu

A seurat objet

reduction

Reduction to use as input for fpc:prediction.strength

Value

An object of class predstr, please see fpc for the detail