Package index
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FastQDesign() - FastQDesign
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SamplePrep() - Prepare a sample
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SampleMatch() - Match Downsample to Reference
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DownSample() - Down Sample a Seurat object
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FindPseudotime() - Find Pseudotime for
SeuratObject
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ConditionalShannonEntropy() - Conditional Shannon Entropy
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Entropy() - Entropy
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ExtractMTX() - Extract metadata from mtx.gz file
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FindAllMarkersByCondition() - Find Markers By Condition
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FixedNumClusters() - Customize Cluster Number
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JaccardIndex() - Jaccard Index
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MarkerGeneFilter() - DE Markers Filters
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OptimalNumClusters() - Find the optimal number of cell clusters for Seurat object
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PPV() - Positive Predictive Value(PPV)
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RootNodeSelect() - Root Node Selection for
cell_data_set
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fastF_freq() - Find Cell Barcode Whitelist from FastQ
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fastF_filter() - Filter FastQ Files Using Whitelist
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fastF_crb() - Extract CR/CB Tags from BAM
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fastF_bam2db() - Convert BAM to SQLite UMI Matrix
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fastF_extract() - Extract Custom Tags from BAM