Filter FastQ Files Using Whitelist
Usage
fastF_filter(
R1,
R2 = NULL,
I1 = NULL,
out = ".",
whitelist = NULL,
len = 16L,
seed = 926L,
rate = 0,
allcells = FALSE
)Arguments
- R1
Path to R1 fastq files (required)
- R2
Path to R2 fastq files (optional)
- I1
Path to I1 fastq files (optional)
- out
Output directory (default: ".")
- whitelist
Path to whitelist file (required unless allcells=TRUE)
- len
Length of cell barcode (default: 16)
- seed
Random seed (default: 926)
- rate
Rate of reads to keep (default: 0)
- allcells
Keep all reads with cell barcode (default: FALSE)